3T MRI Software //
Software and Imaging Protocols
Standard Imaging Protocols
MRN uses standard imaging protocols for most studies, which includes standard scanning parameters and naming schemes for basic imaging methods. Study-specific imaging techniques can also be included if needed. Click here for a list.
MRI Analysis Software
MRN has an automated data pipeline that collects, organizes, and processes 3T MR data. For more information, click here. Additional software is also available:
- AFNI > from the National Institute of Mental Health; runs on Unix+X11+Motif systems.
- SPM > MATLAB software package from the Wellcome Department of Imaging Neuroscience at University College London
- FSL > runs on Apple, PCs (Linux and Windows) and Sun; from the University of Oxford's FMRIB Centre
- Freesurfer > available for Linux and Mac OS X operating systems; from CorTechs and the Athinoula A. Martinos Center for Bioimedical Imaging at Harvard University
The following toolboxes were developed for group Independent Components Analysis (ICA) and many other related applications. Please see http://mialab.mrn.org/software/ for documentation, code, and publications on them:
- GIFT
- FNCToolbox
- FIT
- LCMODEL
